Sen2cor 2.3.1 processing error

Get this error when trying to execute the latest version of sen2cor.
Any ideas on what can be wrong?
Regards
/Jonas

$ L2A_Process S2A_MSIL1C_20170127T102301_N0204_R065_T33VXG_20170127T102258.SAFE/

Sentinel-2 Level 2A Processor (Sen2Cor), 2.3.1, created: 2017.02.03 started …
no resolution specified, will process all resolutions.
Progress[%]: 0.13 : PID-53112, L2A_ProcessTile: processing with resolution 60 m, elapsed time[s]: 3.865
Progress[%]: 0.13 : PID-53112, L2A_ProcessTile: start of pre processing, elapsed time[s]: 0.000
Progress[%]: 0.13 : PID-53112, L2A_Tables: start import, elapsed time[s]: 0.062
Progress[%]: 0.17 : PID-53112, L2A_Tables: band B01 imported, elapsed time[s]: 1.293
Progress[%]: 1.24 : PID-53112, L2A_Tables: band B02 imported, elapsed time[s]: 32.524
Progress[%]: 2.29 : PID-53112, L2A_Tables: band B03 imported, elapsed time[s]: 32.048
Progress[%]: 3.36 : PID-53112, L2A_Tables: band B04 imported, elapsed time[s]: 32.607
Progress[%]: 3.65 : PID-53112, L2A_Tables: band B05 imported, elapsed time[s]: 8.939
Progress[%]: 3.94 : PID-53112, L2A_Tables: band B06 imported, elapsed time[s]: 8.908
Progress[%]: 4.24 : PID-53112, L2A_Tables: band B07 imported, elapsed time[s]: 9.079
Progress[%]: 4.54 : PID-53112, L2A_Tables: band B8A imported, elapsed time[s]: 9.188
Progress[%]: 4.58 : PID-53112, L2A_Tables: band B09 imported, elapsed time[s]: 1.195
Progress[%]: 4.61 : PID-53112, L2A_Tables: band B10 imported, elapsed time[s]: 0.776
Progress[%]: 4.90 : PID-53112, L2A_Tables: band B11 imported, elapsed time[s]: 8.924
Progress[%]: 5.19 : PID-53112, L2A_Tables: band B12 imported, elapsed time[s]: 8.939
Progress[%]: 5.19 : PID-53112, L2A_ProcessTile: start of Scene Classification, elapsed time[s]: 0.000
Progress[%]: 5.20 : PID-53112, Pre process , elapsed time[s]: 0.155
Progress[%]: 5.20 : PID-53112, L2A_SC init , elapsed time[s]: 0.186
Progress[%]: 5.21 : PID-53112, L2A_CSND_1_1 , elapsed time[s]: 0.187
Progress[%]: 5.21 : PID-53112, L2A_CSND_1_2 , elapsed time[s]: 0.201
Progress[%]: 5.22 : PID-53112, L2A_CSND_2_0 , elapsed time[s]: 0.156
Progress[%]: 5.23 : PID-53112, L2A_CSND_2_1 , elapsed time[s]: 0.170
Progress[%]: 5.23 : PID-53112, L2A_CSND_2_1_2, elapsed time[s]: 0.171
Progress[%]: 5.23 : PID-53112, L2A_CSND_2_2 , elapsed time[s]: 0.078
Progress[%]: 5.24 : PID-53112, L2A_CSND_2_3 , elapsed time[s]: 0.077
Progress[%]: 5.24 : PID-53112, L2A_CSND_2_4 , elapsed time[s]: 0.140
Progress[%]: 5.25 : PID-53112, L2A_CSND_2_5 , elapsed time[s]: 0.248
Progress[%]: 5.26 : PID-53112, L2A_CSND_3 , elapsed time[s]: 0.280
Progress[%]: 5.26 : PID-53112, L2A_CSND_5_1 , elapsed time[s]: 0.201
Progress[%]: 5.28 : PID-53112, L2A_CSND_5_2 , elapsed time[s]: 0.388
Progress[%]: 5.29 : PID-53112, L2A_CSND_6 , elapsed time[s]: 0.264
Progress[%]: 5.29 : PID-53112, L2A_CSND_6_2 , elapsed time[s]: 0.186
Progress[%]: 5.30 : PID-53112, L2A_CSND_7 , elapsed time[s]: 0.249
Process L2A_ProcessTile-1:
Traceback (most recent call last):
File “C:\Users\jonas.ardo\AppData\Local\Continuum\Anaconda2\lib\multiprocessing\process.py”, line 258, in _bootstrap
self.run()
File “C:\Users\jonas.ardo\AppData\Local\Continuum\Anaconda2\lib\site-packages\sen2cor-2.3.1-py2.7.egg\sen2cor\L2A_ProcessTile.py”, line 121, in run
if self.process_60() == False:
File “C:\Users\jonas.ardo\AppData\Local\Continuum\Anaconda2\lib\site-packages\sen2cor-2.3.1-py2.7.egg\sen2cor\L2A_ProcessTile.py”, line 147, in process_60
return self.process()
File “C:\Users\jonas.ardo\AppData\Local\Continuum\Anaconda2\lib\site-packages\sen2cor-2.3.1-py2.7.egg\sen2cor\L2A_ProcessTile.py”, line 205, in process
if(sc.process() == False):
File “C:\Users\jonas.ardo\AppData\Local\Continuum\Anaconda2\lib\site-packages\sen2cor-2.3.1-py2.7.egg\sen2cor\L2A_SceneClass.py”, line 856, in process
self.L2A_SHD()
File “C:\Users\jonas.ardo\AppData\Local\Continuum\Anaconda2\lib\site-packages\sen2cor-2.3.1-py2.7.egg\sen2cor\L2A_SceneClass.py”, line 446, in L2A_SHD
csd1 = self.L2A_CSHD_1()
File “C:\Users\jonas.ardo\AppData\Local\Continuum\Anaconda2\lib\site-packages\sen2cor-2.3.1-py2.7.egg\sen2cor\L2A_SceneClass.py”, line 497, in L2A_CSHD_1
filt_b = zeros([y_aa,x_aa], float32)
TypeError: ‘float’ object cannot be interpreted as an index

Hi,
try to reinstall Anaconda to the newest version. Before uninstall sen2co

Regards

I got same issue.
When I downgraded numpy version, it works.

pip install numpy==1.11.3

2 Likes

Thanks, works fine after “pip install numpy==1.11.3”

Thanks for the numpy trick, solved a sen2cor start issue also on Fedora 25.

But now I get:

tail -f 0a4459d4-7461-420a-a2da-7948efae6bed@mundialis@localhost 
    return self.process()
  File "/home/mundialis/anaconda2/lib/python2.7/site-packages/sen2cor-2.3.1-py2.7.egg/sen2cor/L2A_ProcessTile.py", line 205, in process
    if(sc.process() == False):
  File "/home/mundialis/anaconda2/lib/python2.7/site-packages/sen2cor-2.3.1-py2.7.egg/sen2cor/L2A_SceneClass.py", line 820, in process
    if(self.tables.sceneCouldHaveSnow() == True):
  File "/home/mundialis/anaconda2/lib/python2.7/site-packages/sen2cor-2.3.1-py2.7.egg/sen2cor/L2A_Tables.py", line 2551, in sceneCouldHaveSnow
    if(aoi.max() > 0):
  File "/home/mundialis/anaconda2/lib/python2.7/site-packages/numpy/core/_methods.py", line 26, in _amax
    return umr_maximum(a, axis, None, out, keepdims)
ValueError: zero-size array to reduction operation maximum which has no identity

After a complete reinstallation of Anaconda 4.2.0 and sen2cor 2.3.1 I no longer have above error.

But it crashed here (SRTM use is activated):

Process L2A_ProcessTile-1:
Traceback (most recent call last):
  File "/home/mundialis/anaconda2/lib/python2.7/multiprocessing/process.py", line 258, in _bootstrap
    self.run()
  File "/home/mundialis/anaconda2/lib/python2.7/site-packages/sen2cor-2.3.1-py2.7.egg/sen2cor/L2A_ProcessTile.py", line 135, in run
    if self.process_10() == False:
  File "/home/mundialis/anaconda2/lib/python2.7/site-packages/sen2cor-2.3.1-py2.7.egg/sen2cor/L2A_ProcessTile.py", line 178, in process_10
    if not self.process_20():
  File "/home/mundialis/anaconda2/lib/python2.7/site-packages/sen2cor-2.3.1-py2.7.egg/sen2cor/L2A_ProcessTile.py", line 157, in process_20
    return self.process()
  File "/home/mundialis/anaconda2/lib/python2.7/site-packages/sen2cor-2.3.1-py2.7.egg/sen2cor/L2A_ProcessTile.py", line 196, in process
    if(self.preprocess() == False):
  File "/home/mundialis/anaconda2/lib/python2.7/site-packages/sen2cor-2.3.1-py2.7.egg/sen2cor/L2A_ProcessTile.py", line 289, in preprocess
    if(self.tables.importBandList() == False):
  File "/home/mundialis/anaconda2/lib/python2.7/site-packages/sen2cor-2.3.1-py2.7.egg/sen2cor/L2A_Tables.py", line 1101, in importBandList
    demfile = self.gdalDEM_srtm()
  File "/home/mundialis/anaconda2/lib/python2.7/site-packages/sen2cor-2.3.1-py2.7.egg/sen2cor/L2A_Tables.py", line 1533, in gdalDEM_srtm
    src_ds = gdal.Open(srtmf_src, GA_Update)
RuntimeError: No such file or directory

With SRTM usage deactivated, it crashes here:

Progress[%]: 6.11 : PID-7070, L2A_Tables: band B8A imported, elapsed time[s]: 7.752
Progress[%]: 6.30 : PID-7070, L2A_Tables: band B09 imported, elapsed time[s]: 3.447
Progress[%]: 6.46 : PID-7070, L2A_Tables: band B10 imported, elapsed time[s]: 2.942
Progress[%]: 6.84 : PID-7070, L2A_Tables: band B11 imported, elapsed time[s]: 6.809
Progress[%]: 7.21 : PID-7070, L2A_Tables: band B12 imported, elapsed time[s]: 6.773
Progress[%]: 7.21 : PID-7070, L2A_ProcessTile: start of Scene Classification, elapsed time[s]: 0.005
Progress[%]: 7.25 : PID-7070, Pre process   , elapsed time[s]: 0.674
Progress[%]: 7.28 : PID-7070, L2A_SC init   , elapsed time[s]: 0.605
Progress[%]: 7.33 : PID-7070, L2A_CSND_1_1  , elapsed time[s]: 0.955
Progress[%]: 7.39 : PID-7070, L2A_CSND_1_2  , elapsed time[s]: 0.924
Traceback (most recent call last):
  File "/home/mundialis/anaconda2/lib/python2.7/multiprocessing/process.py", line 258, in _bootstrap
    self.run()
  File "/home/mundialis/anaconda2/lib/python2.7/site-packages/sen2cor-2.3.1-py2.7.egg/sen2cor/L2A_ProcessTile.py", line 135, in run
    if self.process_10() == False:
  File "/home/mundialis/anaconda2/lib/python2.7/site-packages/sen2cor-2.3.1-py2.7.egg/sen2cor/L2A_ProcessTile.py", line 178, in process_10
    if not self.process_20():
  File "/home/mundialis/anaconda2/lib/python2.7/site-packages/sen2cor-2.3.1-py2.7.egg/sen2cor/L2A_ProcessTile.py", line 157, in process_20
    return self.process()
  File "/home/mundialis/anaconda2/lib/python2.7/site-packages/sen2cor-2.3.1-py2.7.egg/sen2cor/L2A_ProcessTile.py", line 205, in process
    if(sc.process() == False):
  File "/home/mundialis/anaconda2/lib/python2.7/site-packages/sen2cor-2.3.1-py2.7.egg/sen2cor/L2A_SceneClass.py", line 820, in process
    if(self.tables.sceneCouldHaveSnow() == True):
  File "/home/mundialis/anaconda2/lib/python2.7/site-packages/sen2cor-2.3.1-py2.7.egg/sen2cor/L2A_Tables.py", line 2553, in sceneCouldHaveSnow
    if(aoi.max() > 0):
  File "/home/mundialis/anaconda2/lib/python2.7/site-packages/numpy/core/_methods.py", line 26, in _amax
    return umr_maximum(a, axis, None, out, keepdims)
ValueError: zero-size array to reduction operation maximum which has no identity

Unfortunately no luck at all!

Scene UUID: 0a4459d4-7461-420a-a2da-7948efae6bed

The numpy trick did not work for me either. Still getting ValueError: zero-size array to reduction operation maximum which has no identity Has anyone found a solution?

Anaconda 4.2.13
sen2cor 2.3.1
numpy: 1.11.3-py27_blas_openblas_200 conda-forge

Thanks

@Leonhalt3141
Many thanks for your valuable hint.
After downgrading numpy to 1.11.3 I can confirm that SEN2COR works fine with Anaconda 4.3.1.

Sen2Cor stoped its work this way

Please say to me, may I use the generated 2A folder for work? It opens and looks as usual.

as indicated something in your metadata caused an abnormal exit of sen2cor. Did you have a look at the report file as it is suggested?

Yes, I did.

WARNING [org.esa.s2tbx.dataio.metadata.GenericXmlMetadata]: Metadata: the path to element [bandid] does not exist
WARNING [null]: Last record repeated 8 more times.
INFO [org.esa.snap]: Skipping tile S2A_USER_MTD_L2A_TL_SGS__20160526T120458_A004837_T37RBP.xml because it has crs EPSG:32637 instead of requested EPSG:32636
INFO [org.esa.snap]: Skipping tile S2A_USER_MTD_L2A_TL_SGS__20160526T120458_A004837_T37RBQ.xml because it has crs EPSG:32637 instead of requested EPSG:32636
INFO [org.esa.snap]: Skipping tile S2A_USER_MTD_L2A_TL_SGS__20160526T120458_A004837_T37SBR.xml because it has crs EPSG:32637 instead of requested EPSG:32636
Warning: missing file C:\Downloads\Sen2 Downloaded\2A level\2016\S2A_USER_PRD_MSIL2A_PDMC_20160526T164051_R121_V20160526T082013_20160526T082013.SAFE\GRANULE\S2A_USER_MSI_L2A_TL_SGS__20160526T120458_A004837_T36RWU_N02.02\IMG_DATA\R60m\S2A_USER_MSI_L2A_TL_SGS__20160526T120458_A004837_T36RWU_B01_60m.jp2
Warning: missing file C:\Downloads\Sen2 Downloaded\2A level\2016\S2A_USER_PRD_MSIL2A_PDMC_20160526T164051_R121_V20160526T082013_20160526T082013.SAFE\GRANULE\S2A_USER_MSI_L2A_TL_SGS__20160526T120458_A004837_T36RWV_N02.02\IMG_DATA\R60m\S2A_USER_MSI_L2A_TL_SGS__20160526T120458_A004837_T36RWV_B01_60m.jp2
Warning: missing file C:\Downloads\Sen2 Downloaded\2A level\2016\S2A_USER_PRD_MSIL2A_PDMC_20160526T164051_R121_V20160526T082013_20160526T082013.SAFE\GRANULE\S2A_USER_MSI_L2A_TL_SGS__20160526T120458_A004837_T36RXU_N02.02\IMG_DATA\R60m\S2A_USER_MSI_L2A_TL_SGS__20160526T120458_A004837_T36RXU_B01_60m.jp2
Warning: missing file C:\Downloads\Sen2 Downloaded\2A level\2016\S2A_USER_PRD_MSIL2A_PDMC_20160526T164051_R121_V20160526T082013_20160526T082013.SAFE\GRANULE\S2A_USER_MSI_L2A_TL_SGS__20160526T120458_A004837_T36RXV_N02.02\IMG_DATA\R60m\S2A_USER_MSI_L2A_TL_SGS__20160526T120458_A004837_T36RXV_B01_60m.jp2
Warning: missing file C:\Downloads\Sen2 Downloaded\2A level\2016\S2A_USER_PRD_MSIL2A_PDMC_20160526T164051_R121_V20160526T082013_20160526T082013.SAFE\GRANULE\S2A_USER_MSI_L2A_TL_SGS__20160526T120458_A004837_T36RYU_N02.02\IMG_DATA\R60m\S2A_USER_MSI_L2A_TL_SGS__20160526T120458_A004837_T36RYU_B01_60m.jp2
Warning: missing file C:\Downloads\Sen2 Downloaded\2A level\2016\S2A_USER_PRD_MSIL2A_PDMC_20160526T164051_R121_V20160526T082013_20160526T082013.SAFE\GRANULE\S2A_USER_MSI_L2A_TL_SGS__20160526T120458_A004837_T36RYV_N02.02\IMG_DATA\R60m\S2A_USER_MSI_L2A_TL_SGS__20160526T120458_A004837_T36RYV_B01_60m.jp2
Warning: missing file C:\Downloads\Sen2 Downloaded\2A level\2016\S2A_USER_PRD_MSIL2A_PDMC_20160526T164051_R121_V20160526T082013_20160526T082013.SAFE\GRANULE\S2A_USER_MSI_L2A_TL_SGS__20160526T120458_A004837_T36SWA_N02.02\IMG_DATA\R60m\S2A_USER_MSI_L2A_TL_SGS__20160526T120458_A004837_T36SWA_B01_60m.jp2
Warning: missing file C:\Downloads\Sen2 Downloaded\2A level\2016\S2A_USER_PRD_MSIL2A_PDMC_20160526T164051_R121_V20160526T082013_20160526T082013.SAFE\GRANULE\S2A_USER_MSI_L2A_TL_SGS__20160526T120458_A004837_T36SXA_N02.02\IMG_DATA\R60m\S2A_USER_MSI_L2A_TL_SGS__20160526T120458_A004837_T36SXA_B01_60m.jp2
Warning: missing file C:\Downloads\Sen2 Downloaded\2A level\2016\S2A_USER_PRD_MSIL2A_PDMC_20160526T164051_R121_V20160526T082013_20160526T082013.SAFE\GRANULE\S2A_USER_MSI_L2A_TL_SGS__20160526T120458_A004837_T36SYA_N02.02\IMG_DATA\R60m\S2A_USER_MSI_L2A_TL_SGS__20160526T120458_A004837_T36SYA_B01_60m.jp2
Warning: no image files found for band B1
Warning: missing file C:\Downloads\Sen2 Downloaded\2A level\2016\S2A_USER_PRD_MSIL2A_PDMC_20160526T164051_R121_V20160526T082013_20160526T082013.SAFE\GRANULE\S2A_USER_MSI_L2A_TL_SGS__20160526T120458_A004837_T36RWU_N02.02\IMG_DATA\R60m\S2A_USER_MSI_L2A_TL_SGS__20160526T120458_A004837_T36RWU_B09_60m.jp2
Warning: missing file C:\Downloads\Sen2 Downloaded\2A level\2016\S2A_USER_PRD_MSIL2A_PDMC_20160526T164051_R121_V20160526T082013_20160526T082013.SAFE\GRANULE\S2A_USER_MSI_L2A_TL_SGS__20160526T120458_A004837_T36RWV_N02.02\IMG_DATA\R60m\S2A_USER_MSI_L2A_TL_SGS__20160526T120458_A004837_T36RWV_B09_60m.jp2
Warning: missing file C:\Downloads\Sen2 Downloaded\2A level\2016\S2A_USER_PRD_MSIL2A_PDMC_20160526T164051_R121_V20160526T082013_20160526T082013.SAFE\GRANULE\S2A_USER_MSI_L2A_TL_SGS__20160526T120458_A004837_T36RXU_N02.02\IMG_DATA\R60m\S2A_USER_MSI_L2A_TL_SGS__20160526T120458_A004837_T36RXU_B09_60m.jp2
Warning: missing file C:\Downloads\Sen2 Downloaded\2A level\2016\S2A_USER_PRD_MSIL2A_PDMC_20160526T164051_R121_V20160526T082013_20160526T082013.SAFE\GRANULE\S2A_USER_MSI_L2A_TL_SGS__20160526T120458_A004837_T36RXV_N02.02\IMG_DATA\R60m\S2A_USER_MSI_L2A_TL_SGS__20160526T120458_A004837_T36RXV_B09_60m.jp2
Warning: missing file C:\Downloads\Sen2 Downloaded\2A level\2016\S2A_USER_PRD_MSIL2A_PDMC_20160526T164051_R121_V20160526T082013_20160526T082013.SAFE\GRANULE\S2A_USER_MSI_L2A_TL_SGS__20160526T120458_A004837_T36RYU_N02.02\IMG_DATA\R60m\S2A_USER_MSI_L2A_TL_SGS__20160526T120458_A004837_T36RYU_B09_60m.jp2
Warning: missing file C:\Downloads\Sen2 Downloaded\2A level\2016\S2A_USER_PRD_MSIL2A_PDMC_20160526T164051_R121_V20160526T082013_20160526T082013.SAFE\GRANULE\S2A_USER_MSI_L2A_TL_SGS__20160526T120458_A004837_T36RYV_N02.02\IMG_DATA\R60m\S2A_USER_MSI_L2A_TL_SGS__20160526T120458_A004837_T36RYV_B09_60m.jp2
Warning: missing file C:\Downloads\Sen2 Downloaded\2A level\2016\S2A_USER_PRD_MSIL2A_PDMC_20160526T164051_R121_V20160526T082013_20160526T082013.SAFE\GRANULE\S2A_USER_MSI_L2A_TL_SGS__20160526T120458_A004837_T36SWA_N02.02\IMG_DATA\R60m\S2A_USER_MSI_L2A_TL_SGS__20160526T120458_A004837_T36SWA_B09_60m.jp2
Warning: missing file C:\Downloads\Sen2 Downloaded\2A level\2016\S2A_USER_PRD_MSIL2A_PDMC_20160526T164051_R121_V20160526T082013_20160526T082013.SAFE\GRANULE\S2A_USER_MSI_L2A_TL_SGS__20160526T120458_A004837_T36SXA_N02.02\IMG_DATA\R60m\S2A_USER_MSI_L2A_TL_SGS__20160526T120458_A004837_T36SXA_B09_60m.jp2
Warning: missing file C:\Downloads\Sen2 Downloaded\2A level\2016\S2A_USER_PRD_MSIL2A_PDMC_20160526T164051_R121_V20160526T082013_20160526T082013.SAFE\GRANULE\S2A_USER_MSI_L2A_TL_SGS__20160526T120458_A004837_T36SYA_N02.02\IMG_DATA\R60m\S2A_USER_MSI_L2A_TL_SGS__20160526T120458_A004837_T36SYA_B09_60m.jp2
Warning: no image files found for band B9
Warning: missing file C:\Downloads\Sen2 Downloaded\2A level\2016\S2A_USER_PRD_MSIL2A_PDMC_20160526T164051_R121_V20160526T082013_20160526T082013.SAFE\GRANULE\S2A_USER_MSI_L2A_TL_SGS__20160526T120458_A004837_T36RWU_N02.02\QI_DATA\S2A_USER_DDV_L2A_TL_SGS__20160526T120458_A004837_T36RWU_20m.jp2
Warning: missing file C:\Downloads\Sen2 Downloaded\2A level\2016\S2A_USER_PRD_MSIL2A_PDMC_20160526T164051_R121_V20160526T082013_20160526T082013.SAFE\GRANULE\S2A_USER_MSI_L2A_TL_SGS__20160526T120458_A004837_T36RWV_N02.02\QI_DATA\S2A_USER_DDV_L2A_TL_SGS__20160526T120458_A004837_T36RWV_20m.jp2
Warning: missing file C:\Downloads\Sen2 Downloaded\2A level\2016\S2A_USER_PRD_MSIL2A_PDMC_20160526T164051_R121_V20160526T082013_20160526T082013.SAFE\GRANULE\S2A_USER_MSI_L2A_TL_SGS__20160526T120458_A004837_T36RXU_N02.02\QI_DATA\S2A_USER_DDV_L2A_TL_SGS__20160526T120458_A004837_T36RXU_20m.jp2
Warning: missing file C:\Downloads\Sen2 Downloaded\2A level\2016\S2A_USER_PRD_MSIL2A_PDMC_20160526T164051_R121_V20160526T082013_20160526T082013.SAFE\GRANULE\S2A_USER_MSI_L2A_TL_SGS__20160526T120458_A004837_T36RXV_N02.02\QI_DATA\S2A_USER_DDV_L2A_TL_SGS__20160526T120458_A004837_T36RXV_20m.jp2
Warning: missing file C:\Downloads\Sen2 Downloaded\2A level\2016\S2A_USER_PRD_MSIL2A_PDMC_20160526T164051_R121_V20160526T082013_20160526T082013.SAFE\GRANULE\S2A_USER_MSI_L2A_TL_SGS__20160526T120458_A004837_T36RYU_N02.02\QI_DATA\S2A_USER_DDV_L2A_TL_SGS__20160526T120458_A004837_T36RYU_20m.jp2
Warning: missing file C:\Downloads\Sen2 Downloaded\2A level\2016\S2A_USER_PRD_MSIL2A_PDMC_20160526T164051_R121_V20160526T082013_20160526T082013.SAFE\GRANULE\S2A_USER_MSI_L2A_TL_SGS__20160526T120458_A004837_T36RYV_N02.02\QI_DATA\S2A_USER_DDV_L2A_TL_SGS__20160526T120458_A004837_T36RYV_20m.jp2
Warning: missing file C:\Downloads\Sen2 Downloaded\2A level\2016\S2A_USER_PRD_MSIL2A_PDMC_20160526T164051_R121_V20160526T082013_20160526T082013.SAFE\GRANULE\S2A_USER_MSI_L2A_TL_SGS__20160526T120458_A004837_T36SWA_N02.02\QI_DATA\S2A_USER_DDV_L2A_TL_SGS__20160526T120458_A004837_T36SWA_20m.jp2
Warning: missing file C:\Downloads\Sen2 Downloaded\2A level\2016\S2A_USER_PRD_MSIL2A_PDMC_20160526T164051_R121_V20160526T082013_20160526T082013.SAFE\GRANULE\S2A_USER_MSI_L2A_TL_SGS__20160526T120458_A004837_T36SXA_N02.02\QI_DATA\S2A_USER_DDV_L2A_TL_SGS__20160526T120458_A004837_T36SXA_20m.jp2
Warning: missing file C:\Downloads\Sen2 Downloaded\2A level\2016\S2A_USER_PRD_MSIL2A_PDMC_20160526T164051_R121_V20160526T082013_20160526T082013.SAFE\GRANULE\S2A_USER_MSI_L2A_TL_SGS__20160526T120458_A004837_T36SYA_N02.02\QI_DATA\S2A_USER_DDV_L2A_TL_SGS__20160526T120458_A004837_T36SYA_20m.jp2
Warning: no image files found for band quality_dense_dark_vegetation
INFO [org.esa.snap]: Building product reader - EPSG:32636
WARNING [org.esa.s2tbx.dataio.metadata.GenericXmlMetadata]: Metadata: the path to element [bandid] does not exist
WARNING [null]: Last record repeated 8 more times.
INFO [org.esa.snap]: Skipping tile S2A_OPER_MTD_L1C_TL_SGS__20160526T120458_A004837_T37RBP.xml because it has crs EPSG:32637 instead of requested EPSG:32636
INFO [org.esa.snap]: Skipping tile S2A_OPER_MTD_L1C_TL_SGS__20160526T120458_A004837_T37RBQ.xml because it has crs EPSG:32637 instead of requested EPSG:32636
INFO [org.esa.snap]: Skipping tile S2A_OPER_MTD_L1C_TL_SGS__20160526T120458_A004837_T37SBR.xml because it has crs EPSG:32637 instead of requested EPSG:32636
WARNING [org.openide.filesystems.Ordering]: Found same position 35 for both Context/Product/Product/GroupByNodeTypeAction-separatorAfter.instance and Context/Product/Product/OpenRGBImageViewAction-separatorBefore.instance
INFO [org.esa.snap.rcp.windows.ProductSceneViewTopComponent]: >> componentOpened
INFO [org.esa.snap.rcp.windows.ProductSceneViewTopComponent]: >> componentSelected
INFO [org.esa.snap.rcp.util.ContextGlobalExtenderImpl]: added: key = view, value = org.esa.snap.ui.product.ProductSceneView[[1] B4,0,0,98x811,invalid,layout=java.awt.BorderLayout,alignmentX=0.0,alignmentY=0.0,border=,flags=16777225,maximumSize=,minimumSize=,preferredSize=], oldValue = null
INFO [org.esa.snap.rcp.windows.ProductSceneViewTopComponent]: >> componentOpened
INFO [org.esa.snap.rcp.windows.ProductSceneViewTopComponent]: >> componentDeselected
INFO [org.esa.snap.rcp.util.ContextGlobalExtenderImpl]: removed: key = view, oldValue = org.esa.snap.ui.product.ProductSceneView[[1] B4,0,0,100x812,layout=java.awt.BorderLayout,alignmentX=0.0,alignmentY=0.0,border=,flags=16777225,maximumSize=,minimumSize=,preferredSize=]
INFO [org.esa.snap.rcp.windows.ProductSceneViewTopComponent]: >> componentSelected
INFO [org.esa.snap.rcp.util.ContextGlobalExtenderImpl]: added: key = view, value = org.esa.snap.ui.product.ProductSceneView[[2] Sentinel 2 MSI Natural Colors RGB,0,0,98x811,invalid,layout=java.awt.BorderLayout,alignmentX=0.0,alignmentY=0.0,border=,flags=16777225,maximumSize=,minimumSize=,preferredSize=], oldValue = null

I worked on a huge 6GB file that consists from two zones (36 and 37). I think the mistake is connected to this issue somehow.

actually, many S2 images lie within two UTM zones. Are you sure that your download was completed successfully? The error message indicates that data is missing at expected locations.

I can’t be sure… It looks ok and unzipped normally. I even compared pixel values within certain boundaries and they differ from 1C.

I found that some regions of the whole set missed. But only parts I don’t need. I hope I can trust the images of the area I need!

what do you mean by ‘regions missed’?

Hello,
I just installed sen2cor-2.3.1 and I have the same error: TypeError: ‘float’ object cannot be interpreted as an index.
I work with Anaconda2-4.4.0. Do I need to downgrade the numpy version to 1.11.3 and how do you do that ?
Regards

I have downgraded to numpy 1.11.3 and it works fine now - thanks to Leonhalt3141!
Regards

Anyone can explain for me about this problem ? Idon’t know very much about SNAP, SEN2COR as well as PYTHON programming. I just can apply data with a software ready to use. Please, tell me what I do to solve this problem. Thank you very much