I would note that I have checked the L1C for geolocation (I used 50HLJ over Western Australia because it’s nice and flat), and I can confirm that there are no issues with geolocation in either L1C.
We shall investigate further and get back to you. In the meantime, if you have a particular AOI or Tile Number, that would help our investigation.
In sending the email to the EOSupport@copernicus.esa.int, you triggered an investigation on our side. I shall post this here, and also to the Helpdesk, so you’ll get the answer twice!
Expert assessment of the L1C products showed some differences in geolocation between the 03/03/2016 (N02.01) and 10/08/2016 (N02.04) products, with discrepancy on some parts of the image being around 15 metres in the North-South direction for the 10m RGB Bands (B04, B03, B02), while in other areas of the image the difference is not visible. These geolocation differences are not only visible on mountainous areas but also on flat areas.
The geolocation differences between the 02.01 and 02.04 processing baselines may be due to an issue in the yaw steering compensation, as the errors seems to be dependent on the pixel position across the swath.
It is therefore recommended that a common processing baseline (such as the current 02.04) be used for multitemporal studies.
I’m afraid that bespoke reprocessing of single Granules is not possible.
The Datatake of the product you have issues with will be included in the Reprocessing currently being undertaken, but I cannot confirm exactly when the March 2016 products will be done. I believe I can say with some certainty that it won’t be this year.