Do you have to use IdePix, or would Sen2Cor be an option, too? apparently, Sen2Cor was the tool used to create the example images.
However, you should note that none of the tools will make the image free of any clouds (or non-cloud) - what it can do is to “remove” (or correct for) semi-transparent cirrus. As shown in the example. Opaque cumulus, e.g., will remain to be there.
If you do not need individual images of specific dates to be cloud-cleared, but could to with multiple date data merged into one cloudfree image, you could use instead an image mosaicing tool. have a look around for “cloud-free mosaics” here or via google to find out how (sen2three could maybe do).