Extract values from SEN3 format

Dear all,

I have tried to extract point values using Raster -> Export -> Pixel Values in SNAP. It works only of *.nc files.
Is there any chance of extracting points from the whole SEN3 product as it is read into SNAP (somehow through *xml files) ?
When I add to the "Source Paths " SEN3 set as “Add Product(s)” it gives me an error:
WARNING [org.esa.snap]: Product [/media/mk/SAMSUNG/Sentinel-3/Arctic/S3A_OL_2_WFR____20160616T090938_20160616T091138_20170118T200137_0119_005_207______MR1_R_NT_002.SEN3/w_aer.nc] refused. Cause: Product is not geo-coded.

I would be very grateful for any advice or a hint.
Best wishes,
Marta

Simply selecting the xfdumanifest.xml file as source should work.

Thank you. However, do you know how to do it not only for the viewed file or for a larger list of files? When I try to add “Add directory(s)” and choose *.xml files I get an error :
> WARNING [org.esa.snap]: Product [/media/mk/SAMSUNG/Sentinel-3/Arctic/S3A_OL_2_WFR____20160804T161807_20160804T162007_20170122T083305_0119_007_140______MR1_R_NT_002.SEN3/Oa03_reflectance.nc] refused. Cause: Product is not geo-coded.
> WARNING [org.esa.snap]: Failed to parse time string ‘2016-08-04T16:18:07.002919Z’
> WARNING [org.esa.snap]: Failed to parse time string ‘2016-08-04T16:20:06.994169Z’
> WARNING [org.esa.snap]: Product [/media/mk/SAMSUNG/Sentinel-3/Arctic/S3A_OL_2_WFR____20160804T161807_20160804T162007_20170122T083305_0119_007_140______MR1_R_NT_002.SEN3/Oa04_reflectance.nc] refused. Cause: Product is not geo-coded.
> WARNING [org.esa.snap]: Failed to parse time string ‘2016-08-04T16:18:07.002919Z’
> WARNING [org.esa.snap]: Failed to parse time string ‘2016-08-04T16:20:06.994169Z’

I double checked wildcards and paths. It looks as if there is a problem with reading xdfmanifest files…the same error occurs, when I choose all *.nc files inside SEN3 directories…I reallly need to process some more data than one file.

In the batch processing graph I cannot add value extraction at all.
Could you please help me to solve this problem?

Regards,
Marta

You can add the pixel extraction to the graph but you would need to do it manually in the xml file. In the graph builder it is not supported.
I was successful by using wildcards.
I’ve selected the parent directory where all my OLCI data is located. As pattern I’ve specified *\xfdumanifest.xml
Finally I used the path: G:\SENTINEL3\*\xfdumanifest.xml