ICOR3.0 sentienl2 error

binbinjiang · November 25, 2021, 8:31am

my system is Ubuntu 20. SNAP 8.0 ICOR 3.0 .

python3 /opt/vito/icor/src/icor.py --sensor S2 --generate_viewing_grids_s2 false --glint_cor false --keep_intermediate false --apply_gains false --cloud_average_threshold 0.19 --cloud_low_band B01 --cloud_low_threshold 0.25 --cirrus true --aot true --aerosol_type RURAL --aot_window_size 100 --simec false --watervapor false --bg_window 1 --cirrus_threshold 0.01 --aot_override 0.1 --ozone_override 0.33 --wv_override 2.0 --water_band B08 --water_threshold 0.05 --working_folder /tmp/ --output_file /tmp/S2A_MSIL1C_20190419T023551_N0207_R089_T50RQQ_20190419T042616_processed.tif /media/binbin/Backup Plus/ningde/getOC-master-5/ningde/orgin_try/S2A_MSIL1C_20190419T023551_N0207_R089_T50RQQ_20190419T042616.SAFE/MTD_MSIL1C.xml

4% Convert to scaled radiance

Running ac_runner /tmp/icor_q334npy4_proc/atcconf39k5e7qi.conf
Running ac_runner /tmp/icor_q334npy4_proc/atcconf7pjprzje.conf
Running ac_runner /tmp/icor_q334npy4_proc/atcconf29bmpt11.conf
Running ac_runner /tmp/icor_q334npy4_proc/atcconf62bcfb1_.conf
Running ac_runner /tmp/icor_q334npy4_proc/atcconf9c8a9nzm.conf
Running ac_runner /tmp/icor_q334npy4_proc/atcconf1vyfd8k6.conf
Running ac_runner /tmp/icor_q334npy4_proc/atcconftj_eqlaf.conf
Running ac_runner /tmp/icor_q334npy4_proc/atcconf_cryqbrp.conf
Running ac_runner /tmp/icor_q334npy4_proc/atcconf2_vaqj9u.conf
Running ac_runner /tmp/icor_q334npy4_proc/atcconf1c_s84h8.conf
Running ac_runner /tmp/icor_q334npy4_proc/atcconfrfvccb1v.conf
Running ac_runner /tmp/icor_q334npy4_proc/atcconf_y8z_dx6.conf
Running ac_runner /tmp/icor_q334npy4_proc/atcconfw4f88lat.conf
Running ac_runner /tmp/icor_q334npy4_proc/atcconf5rjc7osa.conf
Running ac_runner /tmp/icor_q334npy4_proc/atcconf0w8dgvn9.conf
Running ac_runner /tmp/icor_q334npy4_proc/atcconfp7moyfjc.conf
Running ac_runner /tmp/icor_q334npy4_proc/atcconfe45aliry.conf
Running ac_runner /tmp/icor_q334npy4_proc/atcconfq8xnh0ds.conf
Running ac_runner /tmp/icor_q334npy4_proc/atcconfzcn0wp35.conf
Running ac_runner /tmp/icor_q334npy4_proc/atcconf0kbt75q8.conf
Running ac_runner /tmp/icor_q334npy4_proc/atcconfu5a1w26v.conf
Running ac_runner /tmp/icor_q334npy4_proc/atcconfdhlvj_nf.conf
Running ac_runner /tmp/icor_q334npy4_proc/atcconfcyhx8pzg.conf
Running ac_runner /tmp/icor_q334npy4_proc/atcconfxpmrd7cj.conf
Running ac_runner /tmp/icor_q334npy4_proc/atcconf4t1jmed7.conf
Running ac_runner /tmp/icor_q334npy4_proc/atcconfbo_yzpow.conf

9% Generate DEM

Running ac_runner /tmp/icor_q334npy4_proc/atcconfbw7lj6fc.conf
Failed!
Process output:
±--------------------------------------------------------------------
| b’:: load config file /tmp/icor_q334npy4_proc/atcconfbw7lj6fc.conf’
| b’:: open image : /tmp/icor_q334npy4_proc/S2A_OPER_MSI_L1C_TL_SGS__20190419T042616_A019963_T50RQQ_N02_07/S2A_OPER_MSI_L1C_TL_SGS__20190419T042616_A019963_T50RQQ_N02_07_ACRUNNER_Scaled_Reflectance_B01.tif’
| b’:: open image : /opt/vito/icor/bin/auxdata/GIS_Database_World/DEM_NOAA_Globe/DEM_Globe_CS.tif’
| b’An Exeption occured : std::exception’
±--------------------------------------------------------------------
Traceback (most recent call last):
File “/opt/vito/icor/src/icor/context.py”, line 497, in invoke_ac_runner_check
p = subprocess.check_output(cmd, shell=True, stderr=subprocess.STDOUT,env=env)
File “/home/binbin/miniconda3/envs/icor/lib/python3.7/subprocess.py”, line 411, in check_output
**kwargs).stdout
File “/home/binbin/miniconda3/envs/icor/lib/python3.7/subprocess.py”, line 512, in run
output=stdout, stderr=stderr)
subprocess.CalledProcessError: Command ‘ac_runner /tmp/icor_q334npy4_proc/atcconfbw7lj6fc.conf’ returned non-zero exit status 255.
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File “/opt/vito/icor/src/icor.py”, line 45, in process_product
icor.sentinel2.process_saf(context, product,working_folder)
File “/opt/vito/icor/src/icor/sentinel2.py”, line 39, in process_saf
sentinel2_granule(granule,context,dir)
File “/opt/vito/icor/src/icor/sentinel2.py”, line 235, in sentinel2_granule
“dem.output.location=” + prefix_context +“_DEM_60M.tif\n”
File “/opt/vito/icor/src/icor/context.py”, line 515, in invoke_ac_runner_check
raise Exception(comment)
Exception: process failed ac_runner /tmp/icor_q334npy4_proc/atcconfbw7lj6fc.conf
in stage : Generate DEM

13% Remove intermediate files from filesystem

Traceback (most recent call last):
File “/opt/vito/icor/src/icor.py”, line 76, in process_product
context.remove_tmp_files(working_folder,keep_tmp, output_folder)
File “/opt/vito/icor/src/icor/context.py”, line 797, in remove_tmp_files
self.remove_dimap_subfolder()
File “/opt/vito/icor/src/icor/context.py”, line 702, in remove_dimap_subfolder
os.chdir(dimap_vector_folder)
FileNotFoundError: [Errno 2] No such file or directory: ‘/tmp/icor_q334npy4_proc/dimap_file.data/vector_data’
could not remove tmpfiles from /tmp/icor_q334npy4_proc. Please check manually.
parsing arguments
done
icor installation folder /opt/vito/icor
running icor for Sentinel2 …
reading config /opt/vito/icor/src/config/local_sentinel2_simec.ini
output path = /tmp/S2A_MSIL1C_20190419T023551_N0207_R089_T50RQQ_20190419T042616_processed.tif
iCOR temp folder : /tmp/icor_q334npy4_proc
workflow = simec
/media/binbin/Backup Plus/ningde/getOC-master-5/ningde/orgin_try/S2A_MSIL1C_20190419T023551_N0207_R089_T50RQQ_20190419T042616.SAFE/MTD_MSIL1C.xml
processing Sentinel2 granule : S2A_OPER_MSI_L1C_TL_SGS__20190419T042616_A019963_T50RQQ_N02.07
delete tmp files failed
------ERROR-------
process failed due to error :
process failed ac_runner /tmp/icor_q334npy4_proc/atcconfbw7lj6fc.conf
in stage : Generate DEM
------ERROR-------
process end
iCOR Atmospheric correction done for product : /tmp/icor_q334npy4_proc/S2A_OPER_MSI_L1C_TL_SGS__20190419T042616_A019963_T50RQQ_N02_07/S2A_OPER_MSI_L1C_TL_SGS__20190419T042616_A019963_T50RQQ_N02_07
Finished tool execution in 48 seconds

acoque · November 25, 2021, 4:45pm

I got the exact same error and have not found a way to solve it for now

binbinjiang · December 13, 2021, 6:45am

do you fix it?

binbinjiang · February 2, 2022, 3:31pm

i change gdal to gdal 2.4.4 , it works

acoque · February 3, 2022, 2:27pm

Ok, thanks for the tip. I’m gonna give it a try (I currently have gdal 3.4.0).

acoque · February 3, 2022, 2:31pm

My workaround to this issue was to use another PC running windows instead of ubuntu x)

serge_fedorov · June 19, 2024, 12:46pm

I faced with a similar error in snap10. Is there another option than installing gdal 2.4.4? It is not very suitable, because it is also tied to the python version.
Surprisingly, there are no difficulties with the processing of Sentinel-3/ OLCI images

process failed due to error :
process failed ac_runner /tmp/icor_zodt4c45_proc/atcconffmxszq6n.conf
in stage : Generate DEM