Dear STEP team,
I have installed SNAP v7 on our cluster. Since my cluster runs Ceph as a storage I had to move the .snap folder e.g., The .snap folder is not always available - #5 by oonkjbr . I can now run SNAP v7 and load/create graphs.
I have tried running http://step.esa.int/docs/tutorials/command_line_inSAR_processing.pdf
When I run the final step with gpt I get the following error:
gpt upd_TOPSAR_Coreg_Interferogram_cl_inSAR.xml -e -p input_parameters.properties > out.log 2>&1
INFO: org.esa.snap.core.gpf.operators.tooladapter.ToolAdapterIO: Initializing external tool adapters
SEVERE: org.esa.s2tbx.dataio.gdal.activator.GDALDistributionInstaller: The environment variable LD_LIBRARY_PATH is not set. It must contain the current folder ‘.’.
INFO: org.esa.snap.core.util.EngineVersionCheckActivator: Please check regularly for new updates for the best SNAP experience.
com.thoughtworks.xstream.converters.reflection.AbstractReflectionConverter$UnknownFieldException: No such field org.esa.snap.core.gpf.graph.Node.file
---- Debugging information ----
field : file
class : org.esa.snap.core.gpf.graph.Node
required-type : org.esa.snap.core.gpf.graph.Node
converter-type : com.thoughtworks.xstream.converters.reflection.ReflectionConverter
path : /graph/node/file
line number : 7
class[1] : org.esa.snap.core.gpf.graph.Graph
version : 1.4.8
at com.thoughtworks.xstream.converters.reflection.AbstractReflectionConverter.handleUnknownField(AbstractReflectionConverter.java:501)
at com.thoughtworks.xstream.converters.reflection.AbstractReflectionConverter.doUnmarshal(AbstractReflectionConverter.java:357)
at com.thoughtworks.xstream.converters.reflection.AbstractReflectionConverter.unmarshal(AbstractReflectionConverter.java:263)
at com.thoughtworks.xstream.core.TreeUnmarshaller.convert(TreeUnmarshaller.java:72)
at com.thoughtworks.xstream.core.AbstractReferenceUnmarshaller.convert(AbstractReferenceUnmarshaller.java:65)
at com.thoughtworks.xstream.core.TreeUnmarshaller.convertAnother(TreeUnmarshaller.java:66)
at com.thoughtworks.xstream.core.TreeUnmarshaller.convertAnother(TreeUnmarshaller.java:50)
at com.thoughtworks.xstream.converters.reflection.AbstractReflectionConverter.doUnmarshal(AbstractReflectionConverter.java:383)
at com.thoughtworks.xstream.converters.reflection.AbstractReflectionConverter.unmarshal(AbstractReflectionConverter.java:263)
at com.thoughtworks.xstream.core.TreeUnmarshaller.convert(TreeUnmarshaller.java:72)
at com.thoughtworks.xstream.core.AbstractReferenceUnmarshaller.convert(AbstractReferenceUnmarshaller.java:65)
at com.thoughtworks.xstream.core.TreeUnmarshaller.convertAnother(TreeUnmarshaller.java:66)
at com.thoughtworks.xstream.core.TreeUnmarshaller.convertAnother(TreeUnmarshaller.java:50)
at com.thoughtworks.xstream.core.TreeUnmarshaller.start(TreeUnmarshaller.java:134)
at com.thoughtworks.xstream.core.AbstractTreeMarshallingStrategy.unmarshal(AbstractTreeMarshallingStrategy.java:32)
at com.thoughtworks.xstream.XStream.unmarshal(XStream.java:1206)
at com.thoughtworks.xstream.XStream.unmarshal(XStream.java:1190)
at com.thoughtworks.xstream.XStream.fromXML(XStream.java:1061)
at org.esa.snap.core.gpf.graph.GraphIO.read(GraphIO.java:83)
at org.esa.snap.core.gpf.main.DefaultCommandLineContext.readGraph(DefaultCommandLineContext.java:75)
at org.esa.snap.core.gpf.main.CommandLineTool.readGraph(CommandLineTool.java:530)
at org.esa.snap.core.gpf.main.CommandLineTool.runGraph(CommandLineTool.java:342)
at org.esa.snap.core.gpf.main.CommandLineTool.runGraphOrOperator(CommandLineTool.java:287)
at org.esa.snap.core.gpf.main.CommandLineTool.run(CommandLineTool.java:188)
at org.esa.snap.core.gpf.main.CommandLineTool.run(CommandLineTool.java:121)
at org.esa.snap.core.gpf.main.GPT.run(GPT.java:54)
at org.esa.snap.core.gpf.main.GPT.main(GPT.java:34)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.esa.snap.runtime.Launcher.lambda$run$0(Launcher.java:55)
at org.esa.snap.runtime.Engine.runClientCode(Engine.java:189)
at org.esa.snap.runtime.Launcher.run(Launcher.java:51)
at org.esa.snap.runtime.Launcher.main(Launcher.java:31)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at com.exe4j.runtime.LauncherEngine.launch(LauncherEngine.java:65)
at com.install4j.runtime.launcher.UnixLauncher.main(UnixLauncher.java:57)
Error: No such field org.esa.snap.core.gpf.graph.Node.file
---- Debugging information ----
field : file
class : org.esa.snap.core.gpf.graph.Node
required-type : org.esa.snap.core.gpf.graph.Node
converter-type : com.thoughtworks.xstream.converters.reflection.ReflectionConverter
path : /graph/node/file
line number : 7
class[1] : org.esa.snap.core.gpf.graph.Graph
version : 1.4.8
The graph I use is:
1.0 Read ${product1} Read ${product2} TOPSAR-Split ${subswath} ${polarization} TOPSAR-Split ${subswath} ${polarization} Apply-Orbit-File Sentinel Precise (Auto Download) 3 false Apply-Orbit-File Sentinel Precise (Auto Download) 3 false Back-Geocoding SRTM 3Sec BILINEAR_INTERPOLATION 0.0 BILINEAR_INTERPOLATION true false false false Interferogram true 5 501 3 true 2 10 true false SRTM 3Sec 0.0 100 false false TOPSAR-Deburst TopoPhaseRemoval 3 SRTM 3Sec 0.0 100 false false false Multilook ${rangeLook} ${azLook} false true GoldsteinPhaseFiltering 1.0 64 3 false 0.2 Write ${outputFile} BEAM-DIMAPCan you help me with this problem? I fear that I am not able to easily figure out this issue.
kind regards,
Raymond
