So what is the reason for this? How can I fix it?
Repeat the coregistration for this pair
I do not know how to configure each operator in version 8 of Snap. Especially in the Enhanced-spectral-Diversity operator. can you guide me please.thanks
coreg_ifg_computation.xml (5.9 KB)
unless you did not get an error message, there is no need for adjustment.
What happens when you run the python script for coregistration?
Please open these two files
- coreg_ifg_computation.xml
- coreg_ifg_computation_subset.xml
and substitute only this line
<useSuppliedShifts>false</useSuppliedShifts>`
by
<useSuppliedRangeShift>false</useSuppliedRangeShift>
<useSuppliedAzimuthShift>false</useSuppliedAzimuthShift>
3 Likes
I followed your instructions but got this error:
Coregistration and Interferogram computation started:
#####################################################################
/application/pi/SAMIRA/subsidence//split/20191208/20191208_IW2.dim
[1] Processing slave file :20191208_IW2.dim
SNAP STDOUT:INFO: org.esa.snap.core.gpf.operators.tooladapter.ToolAdapterIO: Initializing external tool adapters
INFO: org.esa.s2tbx.dataio.gdal.GDALVersion: GDAL 2.4.1 found on system. JNI driver will be used.
INFO: org.esa.s2tbx.dataio.gdal.GDALVersion: Installed GDAL 2.4.1 set to be used by SNAP.
Native library load failed.
java.lang.UnsatisfiedLinkError: /application/pi/.snap/auxdata/gdal/gdal-2-4-X-jni/libgdalalljni.so: libgdal.so.20: cannot open shared object file: No such file or directory
SEVERE: org.esa.s2tbx.dataio.gdal.GDALLoader: Failed to initialize GDAL native drivers. GDAL readers and writers were disabled.java.lang.reflect.InvocationTargetException
INFO: org.esa.snap.core.util.EngineVersionCheckActivator: Please check regularly for new updates for the best SNAP experience.
INFO: org.esa.s2tbx.dataio.gdal.GDALVersion: Installed GDAL 2.4.1 set to be used by SNAP.
Executing processing graph
INFO: org.hsqldb.persist.Logger: dataFileCache open start
WARNING: org.esa.s1tbx.sentinel1.gpf.SpectralDiversityOp: SpectralDiversity (range shift): Cross-correlation failed for all bursts, set range shift to 0.0
Integration problem using method: null
Integration problem using method: null
java.lang.NullPointerException
Waiting thread received a null tile.
Waiting thread received a null tile.
Waiting thread received a null tile.
Waiting thread received a null tile.
java.lang.NullPointerException
90% done.
org.esa.snap.core.gpf.OperatorException: Integration problem using method: null
at org.esa.snap.core.gpf.graph.GraphProcessor$GPFImagingListener.errorOccurred(GraphProcessor.java:379)
at com.sun.media.jai.util.SunTileScheduler.sendExceptionToListener(SunTileScheduler.java:1646)
at com.sun.media.jai.util.SunTileScheduler.scheduleTile(SunTileScheduler.java:921)
at javax.media.jai.OpImage.getTile(OpImage.java:1129)
at javax.media.jai.PlanarImage.getData(PlanarImage.java:2085)
at com.bc.ceres.glevel.MultiLevelImage.getData(MultiLevelImage.java:64)
at org.esa.snap.core.gpf.internal.OperatorContext.getSourceTile(OperatorContext.java:449)
at org.esa.snap.core.gpf.internal.OperatorContext.getSourceTile(OperatorContext.java:435)
at org.esa.snap.core.gpf.Operator.getSourceTile(Operator.java:459)
at org.esa.s1tbx.sentinel1.gpf.TOPSARDeburstOp.computeTileInOneSwathFloat(TOPSARDeburstOp.java:904)
at org.esa.s1tbx.sentinel1.gpf.TOPSARDeburstOp.computeTileStack(TOPSARDeburstOp.java:811)
at org.esa.snap.core.gpf.internal.OperatorImageTileStack.computeRect(OperatorImageTileStack.java:122)
at org.esa.snap.core.gpf.internal.OperatorImageTileStack.computeTile(OperatorImageTileStack.java:86)
at com.sun.media.jai.util.SunTileScheduler.scheduleTile(SunTileScheduler.java:904)
at javax.media.jai.OpImage.getTile(OpImage.java:1129)
at javax.media.jai.PlanarImage.getData(PlanarImage.java:2085)
at com.bc.ceres.glevel.MultiLevelImage.getData(MultiLevelImage.java:64)
at org.esa.snap.core.gpf.internal.OperatorContext.getSourceTile(OperatorContext.java:449)
at org.esa.snap.core.gpf.internal.OperatorContext.getSourceTile(OperatorContext.java:435)
at org.esa.snap.core.gpf.internal.OperatorImageTileStack.computeRect(OperatorImageTileStack.java:116)
at org.esa.snap.core.gpf.internal.OperatorImageTileStack.computeTile(OperatorImageTileStack.java:86)
at com.sun.media.jai.util.SunTileScheduler.scheduleTile(SunTileScheduler.java:904)
at javax.media.jai.OpImage.getTile(OpImage.java:1129)
at com.sun.media.jai.util.RequestJob.compute(SunTileScheduler.java:247)
at com.sun.media.jai.util.WorkerThread.run(SunTileScheduler.java:468)
Caused by: org.esa.snap.core.gpf.OperatorException: Integration problem using method: null
at org.esa.snap.engine_utilities.gpf.OperatorUtils.catchOperatorException(OperatorUtils.java:440)
at org.esa.s1tbx.sentinel1.gpf.SpectralDiversityOp.computeTileStack(SpectralDiversityOp.java:827)
at org.esa.snap.core.gpf.internal.OperatorImageTileStack.computeRect(OperatorImageTileStack.java:122)
at org.esa.snap.core.gpf.internal.OperatorImageTileStack.computeTile(OperatorImageTileStack.java:86)
at com.sun.media.jai.util.SunTileScheduler.scheduleTile(SunTileScheduler.java:904)
… 22 more
Caused by: org.esa.snap.core.gpf.OperatorException: Integration problem using method: null
at org.esa.snap.engine_utilities.gpf.OperatorUtils.catchOperatorException(OperatorUtils.java:440)
at org.esa.s1tbx.sentinel1.gpf.SpectralDiversityOp.estimateRangeOffset(SpectralDiversityOp.java:942)
at org.esa.s1tbx.sentinel1.gpf.SpectralDiversityOp.computeTileStack(SpectralDiversityOp.java:806)
… 25 more
Caused by: org.esa.snap.core.gpf.OperatorException: Integration problem using method: null
at org.esa.s1tbx.sentinel1.gpf.SpectralDiversityOp.integrateImageShifts(SpectralDiversityOp.java:1397)
at org.esa.s1tbx.sentinel1.gpf.SpectralDiversityOp.estimateRangeOffset(SpectralDiversityOp.java:901)
… 26 more
Caused by: java.lang.NullPointerException
at org.esa.s1tbx.sentinel1.gpf.SpectralDiversityOp.integrateImageShifts(SpectralDiversityOp.java:1384)
… 27 more
Error: Integration problem using method: null
– org.jblas INFO Deleting /tmp/jblas5303060032640908120/libquadmath-0.so
– org.jblas INFO Deleting /tmp/jblas5303060032640908120/libgfortran-4.so
– org.jblas INFO Deleting /tmp/jblas5303060032640908120/libjblas_arch_flavor.so
– org.jblas INFO Deleting /tmp/jblas5303060032640908120/libjblas.so
– org.jblas INFO Deleting /tmp/jblas5303060032640908120
[1] Finished process in 84.9906148911 seconds.
As far as I know GDAL 3.0 is shipped with SNAP 8 and this is what should be used.
But @oana_hogoiu is the expert for GDAL.
when I run python splitting_slaves.py project.conf script I get this error: Does this mean that this step is not performed properly and must be repeated?
[14] Folder: 20170715
/application/pi/SAMIRA/subsidence//slaves/20170715
[’/application/pi/SAMIRA/subsidence//slaves/20170715/S1A_IW_SLC__1SDV_20170715T030054_20170715T030121_017476_01D369_C96C.zip’]
FILE(s) : /application/pi/SAMIRA/subsidence//slaves/20170715/S1A_IW_SLC__1SDV_20170715T030054_20170715T030121_017476_01D369_C96C.zip
[’/application/pi/snap/bin/gpt’, ‘/application/pi/SAMIRA/subsidence//graphs/splitgraph2run.xml’, ‘-c’, ‘32G’, ‘-q’, ‘4’]
SNAP STDOUT:INFO: org.esa.snap.core.gpf.operators.tooladapter.ToolAdapterIO: Initializing external tool adapters
INFO: org.esa.s2tbx.dataio.gdal.GDALVersion: GDAL 2.4.1 found on system. JNI driver will be used.
INFO: org.esa.s2tbx.dataio.gdal.GDALVersion: Installed GDAL 2.4.1 set to be used by SNAP.
Native library load failed.
java.lang.UnsatisfiedLinkError: /application/pi/.snap/auxdata/gdal/gdal-2-4-X-jni/libgdalalljni.so: libgdal.so.20: cannot open shared object file: No such file or directory
SEVERE: org.esa.s2tbx.dataio.gdal.GDALLoader: Failed to initialize GDAL native drivers. GDAL readers and writers were disabled.java.lang.reflect.InvocationTargetException
INFO: org.esa.snap.core.util.EngineVersionCheckActivator: Please check regularly for new updates for the best SNAP experience.
INFO: org.esa.s2tbx.dataio.gdal.GDALVersion: Installed GDAL 2.4.1 set to be used by SNAP.
Executing processing graph
INFO: org.hsqldb.persist.Logger: dataFileCache open start
…10%…20%…30%…40%…50%…60%…70%…80%…90% done.
[14] Finished process in 43.92304492 seconds.
let’s wait for Oana’s opinion on this.
But you can check if the splitting worked by opening the processed data in SNAP.
My opinion is that you may re-install SNAP but only selecting the S1TBX as the error is done by a package belonging to the S2TBX.
Hello. Thank you all,
I run the splitting script, and fortunately it worked. . But for the coregistration script it not workd even after follow @mdelgado instruction, and I get this error:
/application/pi/SAMIRA/subsidence//split/20190424/20190424_IW2.dim
[2] Processing slave file :20190424_IW2.dim
SNAP STDOUT:INFO: org.esa.snap.core.gpf.operators.tooladapter.ToolAdapterIO: Initializing external tool adapters
INFO: org.esa.snap.core.util.EngineVersionCheckActivator: Please check regularly for new updates for the best SNAP experience.
Executing processing graph
done.
Error: [NodeId: Read] The ‘file’ parameter is not set
[2] Finished process in 3.78753995895 seconds.
What is the meaning of ‘file’ parameter is not set?
Thank you for your guidance
Files should be zipped… is this the case?
Or is it the original data corrupted?
could it be that the master is not configured correctly? Or would this rather result in a “… not found” message?
1 Like
I do reinstallation of SNAP ver. 8 (the use of the SNAP internal version of GDAL 3.0 has been set), and call splitting script then run coreg-ifg script, but is not solved yet and coregistration failed. Do you have other idea for fix it?
what happens when you load splitted master product into SNAP and try to coregister it there with one of the slave images manually using BackGeocoding? If it works inside SNAP, the problem could be the config file. If it does not work inside SNAP, the input data is already invalid (e.g. empty after split)
It is the same when I perform it manually.
please share a screenshot of both the master and the slave image you used for this.
