you have to edit and execute StaMPS_CONFIG file as defined in the manual
it is explained a couple of posts above.
ok thanks ABraun
hello, i met the same mistake as u,and i have tried some methods but no success, so i want to ask how u solve it.Tks very much!
Hello,
I’ am having a small problem since I install a new virtual machine for stamps analysis. I tried to installe verything right, but i think i might have a problem with the triangle. the following error accours in step 8 of matlab process.
such as snaphu, triangle has to be installed separately
i installed snaphu and triangle with repository
Sudo apt-get install snaphu
sudo apt-get install Triangle
it was told in the workflow that this will be enough , because the pre process is done in SNAP outside the linux workflow.
i find this other problem among it
and this is what i get after i installed Triangle
the fact that he is unable to locate package the reason?
i did the same installation on my old virtual macchine, and I didn’t had this problem before.
according to this documentation it is triangle-bin
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Hello all!
I have successfully performed PSI processing thru StaMPS. However, after processing, a bunch of files ended up in my home folder as seen in screenshot:
Im not sure which config file I have to change/edit for these files to end up where they should. Hoping you can help me.
Thank you!
the files are being created here because you executed mt_prep_snap in your home folder.
If you want to keep your data clean, create a new folder, navigate into it and run mt_prep_snap there.
Dear @ABraun
I installed TRIANGLE and SNAPHU from the following commands-
SNAPHU: sudo apt-get update
sudo apt-get install snaphu
TRIANGLE: sudo apt-get install triangle-bin
Now, I am not able to locate the installation directory of these softwares in Ubuntu for editing the StaMPS_CONFIG.bash
Where can I find these directories? It would be more helpful if you share a working StaMPS configuration file.
Try whereis snaphu to get its directory.
Could you share the screenshot of your changed path variable file please?
I am not finding anymore clue how to solve the problem with mt_prep_snap and also mt_prep_gamma?
Also how could i add this line to .cshrc or .bashrc file so that this is done automatically?
Thanks in advance.
First of all, I apologize if my issue has already been discussed on the forum; I don’t want to take up your time unnecessarily. However, I am currently stuck on a step that I had previously completed successfully. It seems that the mt_prep_snap command is not working properly, and I am getting the error ‘@: Badly formed number.’ on the last line, and the patch files that are supposed to be created are not being generated.
hello,
did you find any solution to this problem.
hello, unfortunately no