Error of Interferogram in SNAP

[Amirhossein]

Hi everyone!

I don’t know why, but whenever I want to run Interferogram in snap, it shows an error about Operator Exception. Could you guide me please?

Thanks

[ABraun]

We need a bit more information:

• what data are you using?
• what were your previous steps?
• can you post a screenshot of the product that is used for the interferogram module?

[marpet]

Maybe one of the tutorials helps http://step.esa.int/main/doc/tutorials/sentinel-1-toolbox-tutorials/
If not, we need some more information indeed. For example the full message of the error and those things what @ABraun already requested.

[Amirhossein]

Hi

this is the full message:

org.esa.snap.core.gpf.OperatorException: Interferogram: java.lang.NullPointerException
at org.esa.snap.engine_utilities.gpf.OperatorUtils.catchOperatorException(OperatorUtils.java:391)
at org.esa.s1tbx.insar.gpf.InterferogramOp.initialize(InterferogramOp.java:195)
at org.esa.snap.core.gpf.internal.OperatorContext.initializeOperator(OperatorContext.java:485)
at org.esa.snap.core.gpf.internal.OperatorContext.getTargetProduct(OperatorContext.java:272)
at org.esa.snap.core.gpf.Operator.getTargetProduct(Operator.java:382)
at org.esa.snap.core.gpf.GPF.createProductNS(GPF.java:315)
at org.esa.snap.core.gpf.GPF.createProduct(GPF.java:290)
at org.esa.snap.core.gpf.GPF.createProduct(GPF.java:269)
at org.esa.snap.graphbuilder.rcp.dialogs.SingleOperatorDialog.createTargetProduct(SingleOperatorDialog.java:172)
[catch] at org.esa.snap.graphbuilder.rcp.dialogs.SingleOperatorDialog.onApply(SingleOperatorDialog.java:288)
at org.esa.snap.ui.AbstractDialog.lambda$initUI$14(AbstractDialog.java:494)
at javax.swing.AbstractButton.fireActionPerformed(Unknown Source)
at javax.swing.AbstractButton$Handler.actionPerformed(Unknown Source)
at javax.swing.DefaultButtonModel.fireActionPerformed(Unknown Source)
at javax.swing.DefaultButtonModel.setPressed(Unknown Source)
at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(Unknown Source)
at java.awt.AWTEventMulticaster.mouseReleased(Unknown Source)
at java.awt.Component.processMouseEvent(Unknown Source)
at javax.swing.JComponent.processMouseEvent(Unknown Source)
at java.awt.Component.processEvent(Unknown Source)
at java.awt.Container.processEvent(Unknown Source)
at java.awt.Component.dispatchEventImpl(Unknown Source)
at java.awt.Container.dispatchEventImpl(Unknown Source)
at java.awt.Component.dispatchEvent(Unknown Source)
at java.awt.LightweightDispatcher.retargetMouseEvent(Unknown Source)
at java.awt.LightweightDispatcher.processMouseEvent(Unknown Source)
at java.awt.LightweightDispatcher.dispatchEvent(Unknown Source)
at java.awt.Container.dispatchEventImpl(Unknown Source)
at java.awt.Window.dispatchEventImpl(Unknown Source)
at java.awt.Component.dispatchEvent(Unknown Source)
at java.awt.EventQueue.dispatchEventImpl(Unknown Source)
at java.awt.EventQueue.access$500(Unknown Source)
at java.awt.EventQueue$3.run(Unknown Source)
at java.awt.EventQueue$3.run(Unknown Source)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(Unknown Source)
at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(Unknown Source)
at java.awt.EventQueue$4.run(Unknown Source)
at java.awt.EventQueue$4.run(Unknown Source)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(Unknown Source)
at java.awt.EventQueue.dispatchEvent(Unknown Source)
at org.netbeans.core.TimableEventQueue.dispatchEvent(TimableEventQueue.java:159)
at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source)
at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source)
at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source)
at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
at java.awt.EventDispatchThread.run(Unknown Source)

[lveci]

What are the input products? It’s likely something is unexpectedly missing in the input products if they are not SLC SAR products or if they are just a tif file without orbit information etc. In any case the operator should be more robust to tell us what went wrong. With your input we can fix this.

[elenaath]

Hello everyone,
i am processing two sliced assembly s1-b dim products and i am getting an operation exception error (org.esa.snap.core.gpf.OperatorException: Interferogram: org.jblas.NativeBlas.dgemm(CCIIID[DII[DIID[DII)V)
during the interferogram formation step, although coregistration looks fine.
Any clue about what i am doing wrong?
Thank you in advance

[waqas782]

Hi @elenaath
Were you able to point out the reason for this error? We are processing a number of interferograms but getting this error for one pair.

[ls104]

Hi,

I had the same error on a fresh Ubuntu 16.04 installation when trying to form an interferogram with the most recent version of SNAP (5.0.4).
(org.esa.snap.core.gpf.OperatorException: Interferogram: org.jblas.NativeBlas.dgemm(CCIIID[DII[DIID[DII)V)

It turned out that a library was missing. After installing the packet “libgfortran3” Interferogram formation runs fine.

@developers: Could you include checking for this dependency in the installer script?

Thanks,

Lukas

[franzelhi]

Thanks, that is the solution!

[guitambe]

Same problem, same solution. Lubuntu 17.10 x64

[hamidbanan]

I use Ubunto and I have same error on Back-geocoding of 29 S1. I don’t have any problem in Win 10 but in not in ubuntu. error: org.jblas.nativeblas.degmm…
should I remove Ubuntu and install Lubuntu?

[thho]

Dear @hamidbanan,

please have a look if this is a possible solution, it might be related to your error I guess.

Error in SAR image corregistration: Error: [Nodeld: CreateStack] org.jblas.NativeBlas.dgemm(CCIIID[DII[DIID[DII)V)

As mentioned by @lveci, the error alone refers to the missing dependency, the fastest solution tested with Debian based distributions like Ubuntu/Kubuntu is installing the libgfortran3 packge sudo apt install libgfortran3 this is all you need and always does the job for me if I set up a new system or instance. However, libgfortran3 is often used as dependency by other packages, therefore it may be installed if your system is “older” which means you already have many packages installed…but it …

[hamidbanan]

Dear @thho
thanks for your guide, I will check it.

[aTnT]

Thanks! I had a similar error with “Coregistration” and running sudo apt-get install libgfortran3 in my Ubuntu 18 LTS solved the problem.

[aldo]

it is impossible to install libgfortan3 in ubuntu 20.04
I must return to 18.04

[luo411795604]

I also encountered this problem, my operation systems is ubuntu 20.04, and i can’t install the libgfortran3

[CDE]

Hi @aTnT @thho ,

I have the same error in SAR corregistration :Error: [NodeId: Back-Geocoding] org.jblas.NativeBlas.dgemm(CCIIID[DII[DIID[DII)V

it doesn’t work for me sudo apt-get install libgfortran3 in my ubuntu18.04

what shall I test ??

Thanks.

[ABraun]

@CDE

it doesn’t work for me sudo apt-get install libgfortran3 in my ubuntu18.04

please specify why this does not work

[thho]

Read this thread from the linked post until the end. Be sure to read it completely to check the latest issues with that error and up to date SNAP installations:

Error in SAR image corregistration: Error: [Nodeld: CreateStack] org.jblas.NativeBlas.dgemm(CCIIID[DII[DIID[DII)V)

I’m having the same issue, the only difference being I’m using Sentinel-1 data. sudo apt install libgfortran3 appears not to have made any difference.

[wilms]

Hi CDE
Try installing libgfortran5:
sudo apt-get install libgfortran5
give me a shout if it works.
j