jep, ok that makes everything clear…
For some reason, your exported colnames differ from what I expected in the script:
your colnames: export_res_.1 etc.
the colnames we need in the script: export_res_1 etc.
you see the dot before the numbers, that breaks the pattern and nothing works.
I think for you it is easier to use a changed the script, use this:
###########################
###subset ts plot export###
###########################
library(sp)
library(rgdal)
library(rgeos)
#read subsetpolygon
roi <- readOGR("/home/user/studysite/roi.kml")
#read exported .csv
pnts <- read.csv("/home/user/ISNAR_master_date/stamps_tsexport.csv")
#create spatial object
lon <- pnts$export_res_.1[2:nrow(pnts)]
lat <- pnts$export_res_.2[2:nrow(pnts)]
loc <- data.frame(lon, lat)
pnts.geo <- SpatialPointsDataFrame(loc, pnts[2:nrow(pnts), ],
proj4string = CRS("+proj=longlat +ellps=WGS84 +datum=WGS84 +no_defs"))
#spatial subset
pnts.sub <- pnts.geo[roi, ]
#create table from spatial subset
sub.csv <- rbind(pnts[1, ], pnts.sub@data)
#export csv to StaMPS-Visualizer application
#adapt path to your machine
write.table(sub.csv, file = "/home/user/stamps_visualizer/stusi/stamps_tsexport.csv",
row.names = F, col.names = T, sep = ",")